BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB011B08LP1|AL426160
(743 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1395 1444 0.0
>3x_Contig1395
Length = 6688
Score = 1444 bits (727), Expect = 0.0
Identities = 739/743 (99%), Gaps = 1/743 (0%)
Strand = Plus / Minus
Query: 2 cctatgtcgttgtaaaacagtgtgccatagcaacacttcagagtcctgagtcatccgatc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 cctatgtcgttgtaaaacagtgtgccatagcaacacttcagagtcctgagtcatccgatc 5452
Query: 62 ttcgttagcgggtaactaaacacacgcttcagacgatgatcagaggtgtatactgatggt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5451 ttcgttagcgggtaactaaacacacgcttcagacgatgatcagaggtgtatactgatggt 5392
Query: 122 aatcagtagtgttgttcgtcaacttgcactcaagaagtgcgctgttgttagttactttgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5391 aatcagtagtgttgttcgtcaacttgcactcaagaagtgcgctgttgttagttactttgt 5332
Query: 182 ttactttcagatttggttttttgccgcccttatgaagaagttaggaaatactatttcaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5331 ttactttcagatttggttttttgccgcccttatgaagaagttaggaaatactatttcaaa 5272
Query: 242 aacttacacgtgaccaacaaatcccaaaaagtcaacaacatgttaccctgacatcacgtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5271 aacttacacgtgaccaacaaatcccaaaaagtcaacaacatgttaccctgacatcacgtc 5212
Query: 302 acacgaaaagatgcgatcacgtgaccagaatgacatgagactccacattgtttcggaaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5211 acacgaaaagatgcgatcacgtgaccagaatgacatgagactccacattgtttcggaaaa 5152
Query: 362 acttctgttggagcaggagcgaagtgctcgttcaaagcggaataagaaaacacagaaaca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5151 acttctgttggagcaggagcgaagtgctcgttcaaagcggaataagaaaacacagaaaca 5092
Query: 422 tacgccaaggctgtttatcgctccatatggacggaaaaacttacgatgaagagagcgtac 481
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5091 tacgcaaaggctgtttatcgctccatatggacggaaaaacttacgatgaagagagcgtac 5032
Query: 482 aggcatgcttgtacgttgagaaagaaaggcacacagtcattgttttaatccattacgaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5031 aggcatgcttgtacgttgagaaagaaaggcacacagtcattgttttaatccattacgaga 4972
Query: 542 tcagcatgtmattcgatactacttgttcccttaccggcactggctctggcactggtgtcg 601
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4971 tcagcatgtaattcgatactacttgttcccttaccggcactggctctggcactggtgtcg 4912
Query: 602 ttaaacggtatcacgttttggtaaccccacaaatgtgcacctgatggt-sagaaacgtaa 660
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4911 ttaaacggtatcacgttttggtaaccccacaaatgtgcacctgatggtgcagaaacgtaa 4852
Query: 661 atatggttcaccaagttcaaagcacaaggcgtattacgctactaactctaagtaggtgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4851 atatggttcaccaagttcaaagcacaaggcgtattacgctactaactctaagtaggtgtt 4792
Query: 721 tctcttcttcagaaaagaaaaac 743
|||||||||||||||||||||||
Sbjct: 4791 tctcttcttcagaaaagaaaaac 4769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4953
Number of Sequences: 1807
Number of extensions: 4953
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 743
length of database: 10,358,551
effective HSP length: 16
effective length of query: 727
effective length of database: 10,329,639
effective search space: 7509647553
effective search space used: 7509647553
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)